vignettes/00-install_and_sessioninfo.Rmd
00-install_and_sessioninfo.RmdLast updated: 2023-01-04
plotmics
# install devtools if not installed
if(!require(devtools)){ install.packages("devtools") }
# install plotmics if not installed
if(!require(plotmics)){ devtools::install_github("amitjavilaventura/plotmics") }## R version 4.2.0 (2022-04-22)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: Ubuntu 18.04.6 LTS
##
## Matrix products: default
## BLAS: /usr/lib/x86_64-linux-gnu/openblas/libblas.so.3
## LAPACK: /usr/lib/x86_64-linux-gnu/libopenblasp-r0.2.20.so
##
## locale:
## [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
## [3] LC_TIME=es_ES.UTF-8 LC_COLLATE=en_US.UTF-8
## [5] LC_MONETARY=es_ES.UTF-8 LC_MESSAGES=en_US.UTF-8
## [7] LC_PAPER=es_ES.UTF-8 LC_NAME=C
## [9] LC_ADDRESS=C LC_TELEPHONE=C
## [11] LC_MEASUREMENT=es_ES.UTF-8 LC_IDENTIFICATION=C
##
## attached base packages:
## [1] grid stats4 stats graphics grDevices utils datasets
## [8] methods base
##
## other attached packages:
## [1] plotmics_7.0.1 ggvenn_0.1.9 ggforestplot_0.1.0
## [4] ggdendro_0.1.22 ggh4x_0.2.3 ggrepel_0.9.1
## [7] ggpubr_0.4.0 ggplot2_3.4.0 gridExtra_2.3
## [10] UpSetR_1.4.0 Rsamtools_2.6.0 Biostrings_2.66.0
## [13] XVector_0.38.0 pkgcond_0.1.1 ChIPpeakAnno_3.32.0
## [16] plyranges_1.18.0 GenomicRanges_1.50.1 GenomeInfoDb_1.34.4
## [19] IRanges_2.32.0 S4Vectors_0.36.1 BiocGenerics_0.44.0
## [22] reshape2_1.4.4 magrittr_2.0.3 purrr_0.3.5
## [25] stringr_1.4.0 tidyr_1.2.1 dplyr_1.0.10
## [28] plyr_1.8.8
##
## loaded via a namespace (and not attached):
## [1] readxl_1.4.1 backports_1.4.1
## [3] BiocFileCache_2.6.0 systemfonts_1.0.4
## [5] lazyeval_0.2.2 splines_4.2.0
## [7] BiocParallel_1.32.4 digest_0.6.31
## [9] ensembldb_2.22.0 htmltools_0.5.4
## [11] fansi_1.0.3 memoise_2.0.1
## [13] BSgenome_1.66.1 InteractionSet_1.26.0
## [15] openxlsx_4.2.5.1 matrixStats_0.63.0
## [17] pkgdown_2.0.7 prettyunits_1.1.1
## [19] colorspace_2.0-3 blob_1.2.3
## [21] rappdirs_0.3.3 textshaping_0.3.6
## [23] haven_2.5.1 xfun_0.35
## [25] crayon_1.5.2 RCurl_1.98-1.9
## [27] jsonlite_1.8.4 graph_1.76.0
## [29] survival_3.2-13 glue_1.6.2
## [31] gtable_0.3.1 zlibbioc_1.44.0
## [33] DelayedArray_0.24.0 car_3.0-10
## [35] abind_1.4-5 scales_1.2.1
## [37] futile.options_1.0.1 DBI_1.1.3
## [39] rstatix_0.7.0 Rcpp_1.0.9
## [41] progress_1.2.2 foreign_0.8-82
## [43] bit_4.0.4 httr_1.4.4
## [45] ellipsis_0.3.2 pkgconfig_2.0.3
## [47] XML_3.99-0.13 sass_0.4.4
## [49] dbplyr_2.2.1 utf8_1.2.2
## [51] tidyselect_1.2.0 rlang_1.0.6
## [53] AnnotationDbi_1.60.0 cellranger_1.1.0
## [55] munsell_0.5.0 tools_4.2.0
## [57] cachem_1.0.6 cli_3.4.1
## [59] generics_0.1.3 RSQLite_2.2.19
## [61] broom_1.0.2 evaluate_0.19
## [63] fastmap_1.1.0 yaml_2.3.6
## [65] ragg_1.2.4 knitr_1.41
## [67] bit64_4.0.5 fs_1.5.2
## [69] zip_2.2.2 KEGGREST_1.38.0
## [71] AnnotationFilter_1.22.0 RBGL_1.74.0
## [73] formatR_1.12 xml2_1.3.3
## [75] biomaRt_2.54.0 compiler_4.2.0
## [77] rstudioapi_0.13 filelock_1.0.2
## [79] curl_4.3.3 png_0.1-7
## [81] ggsignif_0.6.1 tibble_3.1.8
## [83] bslib_0.4.2 stringi_1.7.8
## [85] futile.logger_1.4.3 GenomicFeatures_1.50.3
## [87] desc_1.4.2 forcats_0.5.1
## [89] lattice_0.20-45 ProtGenerics_1.30.0
## [91] Matrix_1.5-3 multtest_2.54.0
## [93] vctrs_0.5.1 pillar_1.8.1
## [95] lifecycle_1.0.3 jquerylib_0.1.4
## [97] data.table_1.14.6 bitops_1.0-7
## [99] rtracklayer_1.58.0 R6_2.5.1
## [101] BiocIO_1.8.0 rio_0.5.26
## [103] codetools_0.2-18 lambda.r_1.2.4
## [105] MASS_7.3-56 assertthat_0.2.1
## [107] SummarizedExperiment_1.28.0 rprojroot_2.0.3
## [109] rjson_0.2.21 withr_2.5.0
## [111] regioneR_1.22.0 GenomicAlignments_1.34.0
## [113] GenomeInfoDbData_1.2.9 parallel_4.2.0
## [115] hms_1.1.2 VennDiagram_1.7.3
## [117] rmarkdown_2.19 carData_3.0-5
## [119] MatrixGenerics_1.10.0 Biobase_2.58.0
## [121] restfulr_0.0.15